Popular Alternatives to BioEdit for Mac. Explore 15 Mac apps like BioEdit, all suggested and ranked by the AlternativeTo user community. Which mac is most recommended for graphic designers using adobe creative cloud suite. Multiple sequence alignment software. Free Mac Windows Linux. No features added Add a feature. ApE - A plasmid Editor.

BioEdit Sequence Alignment Editor for Windows 95/98/NT/XP BioEdit is a biological sequence alignment editor written for Windows 95/98/NT/2000/XP. An intuitive multiple document interface with convenient features makes alignment and manipulation of sequences relatively easy on your desktop computer. Several sequence manipulation and analysis options and links to external anaylsis programs facilitate a working environment which allows you to view and manipulate sequences with simple point-and-click operations. BioEdit's features include: New version is WinXP compatible • Several modes of hand alignment • Automated ClustalW alignment • Automated Blast searches (local and WWW) • Plasmid drawing and annotation • Accessory application configuration • Restriction mapping • RNA comparative analysis tools • Graphical matrix data viewing tools • Shaded alignment figures • Translation-based nucleic acid alignment • ABI trace viewing, editing and printing • Customizable. Note: Although BioEdit was recently updated, it is no longer being reliably maintained, and the documentation is out of date and no longer maintained.

It is being updated slowly, but there is no guaranteed finish date. Until documentation is complete, play with the menus and see what happens, or email with a question. Sequence/contig assembly: BioEdit does not directly do assemblies of sequencing data. There is an assembly editor available called BioLign that might serve your needs if they fit a fairly narrow definition.

Please answer the questions below to determine if BioLign is worth trying for your needs: Do you routinely sequence the same gene or highly related genes that are.

The SeqTools package contains three tools for visualising sequence alignments: Blixem, Dotter and Belvu. Blixem is an interactive browser of sequence alignments that have been stacked up in a 'master-slave' multiple alignment; it is not a 'true' multiple alignment but a 'one-to-many' alignment. Dotter is a graphical dot-matrix program for detailed comparison of two sequences. Belvu is a multiple sequence alignment viewer and phylogenetic tool with an extensive set of user-configurable modes to color residues. Supported platforms Our primary supported platform is Ubuntu 14.04 (64-bit). SeqTools is well tested and in daily use on this architecture.

It is also tested frequently on Mac OS X. It should also work on several other platforms, as listed below, but is less thoroughly supported. • Linux - Ubuntu 14.04 (64-bit) - primary supported architecture • Linux - other • Mac OS X (Intel) • Windows (under ) • Other platforms (using ) • (in the ).

Blixem features • Overview section showing the positions of genes and alignments around the alignment window • Detail section showing the actual alignment of protein or nucleotide sequences to the genomic DNA sequence. • View alignments against both strands of the reference sequence. • View sequences in nucleotide or protein mode; in protein mode, Blixem will display the three-frame translation of the reference sequence. • Residues are highlighted in different colours depending on whether they are an exact match, conserved substitution or mismatch. • Gapped alignments are supported, with insertions and deletions being highlighted in the match sequence.

• Matches can be sorted and filtered. • SNPs and other variations can be highlighted in the reference sequence. • Poly(A) tails can be displayed and poly(A) signals highlighted in the reference sequence.

Dotter features • Every residue in one sequence is compared to every residue in the other, and a matrix of scores is calculated. • One sequence is plotted on the x-axis and the other on the y-axis. • Noise is filtered out so that alignments appear as diagonal lines.